Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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C G composition in transposon-derived genes is increased in FXD with perturbed immune system
Suganuma T, Hassan H, Gogol M, Workman JL. NAR Mol Med. 2024;1:ugae015.
Establishing Primary and Stable Cell Lines from Frozen Wing Biopsies for Cellular, Physiological, and Genetic Studies in Bats
Deng F, Morales-Sosa P, Bernal-Rivera A, Wang Y, Tsuchiya D, Javier JE, Rohner N, Zhao C, Camacho J. Curr Protoc. 2024;4:e1123.
Distinct Regions within SAP25 Recruit O-Linked Glycosylation, DNA Demethylation, and Ubiquitin Ligase and Hydrolase Activities to the Sin3/HDAC Complex
Goswami P, Banks CAS, Thornton J, Bengs B, Sardiu ME, Florens L, Washburn MP. J Proteome Res. 2024.
Environmental and molecular control of tissue-specific ionocyte differentiation in zebrafish
Peloggia J, Lush ME, Tsai YY, Wood C, Piotrowski T. Development. 2024.
A kalihinol analog disrupts apicoplast function and vesicular trafficking in P. falciparum malaria
Chahine Z, Abel S, Hollin T, Barnes GL, Chung JH, Daub ME, Renard I, Choi JY, Vydyam P, Pal A, Alba-Argomaniz M, Banks CAS, Kirkwood J, Saraf A, Camino I, Castaneda P, Cuevas MC, De Mercado-Arnanz J, Fernandez-Alvaro E, Garcia-Perez A, Ibarz N, Viera-Morilla S, Prudhomme J, Joyner CJ, Bei AK, Florens L, Ben Mamoun C, Vanderwal CD, Le Roch KG. Science. 2024;385:eadm7966.
A powerful and versatile new fixation protocol for immunostaining and in situ hybridization that preserves delicate tissues
Guerrero-Hernandez C, Doddihal V, Mann FG, Jr., Sánchez Alvarado A. BMC Biol. 2024;22:252.
Co-option of the trichome-forming network initiated the evolution of a morphological novelty in Drosophila eugracilis
Rice G, Gaitan-Escudero T, Charles-Obi K, Zeitlinger J, Rebeiz M. Curr Biol. 2024;34:5284-5294 e5283.
Sugar assimilation underlying dietary evolution of Neotropical bats
Camacho J, Bernal-Rivera A, Pena V, Morales-Sosa P, Robb SMC, Russell J, Yi K, Wang Y, Tsuchiya D, Murillo-Garcia OE, Rohner N. [published ahead of print August 28 2024]. Nat Ecol Evol. 2024.
Codon optimality influences homeostatic gene expression in zebrafish
DeVore ML, Bazzini AA. G3 (Bethesda). 2024 doi: 10.1093/g3journal/jkae247.
Isthmus progenitor cells contribute to homeostatic cellular turnover and support regeneration following intestinal injury
Malagola E, Vasciaveo A, Ochiai Y, Kim W, Zheng B, Zanella L, Wang ALE, Middelhoff M, Nienhuser H, Deng L, Wu F, Waterbury QT, Belin B, LaBella J, Zamechek LB, Wong MH, Li L, Guha C, Cheng CW, Yan KS, Califano A, Wang TC. Cell. 2024;187:3056-3071 e3017.
The deubiquitinase Usp7 in Drosophila melanogaster is required for synaptonemal complex maintenance
Lake CM, Gardner J, Briggs S, Yu Z, McKown G, Hawley RS. Proc Natl Acad Sci U S A. 2024;121:e2409346121.
DYRK1A interacts with the tuberous sclerosis complex and promotes mTORC1 activity
Wang P, Sarkar S, Zhang M, Xiao T, Kong F, Zhang Z, Balasubramanian D, Jayaram N, Datta S, He R, Wu P, Chao P, Zhang Y, Washburn M, Florens LA, Nagarkar-Jaiswal S, Jaiswal M, Mohan M. eLife. 2024;12.
Protein profiling of zebrafish embryos unmasks regulatory layers during early embryogenesis
da Silva Pescador G, Baia Amaral D, Varberg JM, Zhang Y, Hao Y, Florens L, Bazzini AA. Cell Rep. 2024;43:114769.
Plasticity of the mitotic spindle in response to karyotype variation
Kunchala P, Varberg JM, O'Toole E, Gardner J, Smith SE, McClain M, Jaspersen SL, Hawley RS, Gerton JL. Curr Biol 2024.
An Integrated Structural Model of the DNA Damage Responsive H3K4me3 Binding WDR76:SPIN1 Complex with the Nucleosome
Liu X, Zhang Y, Wen Z, Hao Y, Banks CAS, Cesare J, Bhattacharya S, Arvindekar S, Lange JJ, Xie Y, Garcia BA, Slaughter BD, Unruh JR, Viswanath S, Florens L, Workman JL, Washburn MP. Proc Natl Acad Sci U S A. 2024;121:e2318601121.
Positional information modulates transient regeneration-activated cell states during vertebrate appendage regeneration
Ortega Granillo A, Zamora D, Schnittker RR, Scott AR, Spluga A, Russell J, Brewster CE, Ross EJ, Acheampong DA, Zhang N, Ferro K, Morrison JA, Rubinstein BY, Perera AG, Wang W, Sanchez Alvarado A. iScience. 2024;27:110737.
Quartz Crystal Microbalance Frequency Response to Discrete Adsorbates in Liquids
Leshansky AM, Rubinstein BY, Fouxon I, Johannsmann D, Sadowska M, Adamczyk Z. Anal Chem. 2024;96:10559-10568.
Modeling the Evolution of S. pombe Populations with Multiple Killer Meiotic Drivers
Lopez Hernandez JF, Rubinstein BY, Unckless RL, Zanders SE. G3 (Bethesda). 2024:jkae142 doi: 10.1093/g3journal/jkae142.
Identification and characterization of intermediate states in mammalian neural crest cell epithelial to mesenchymal transition and delamination
Zhao R, Moore EL, Gogol MM, Unruh JR, Yu Z, Scott AR, Wang Y, Rajendran NK, Trainor PA. eLife. 2024;13 doi: 10.7554/eLife.92844.
Identification of protein aggregates in the aging vertebrate brainwith prion-like and phase-separation properties
Harel I, Chen YR, Ziv I, Singh PP, Heinzer D, Navarro Negredo P, Goshtchevsky U, Wang W, Astre G, Moses E, McKay A, Machado BE, Hebestreit K, Yin S, Sánchez Alvarado A, Jarosz DF, Brunet A. Cell Rep. 2024:112787 doi: 10.1016/j.celrep.2023.112787.
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Ribosomes unraveled: The path from variant to impact
Kostos P, Galligos A, Gerton JL. Cell Genom. 2024;4:100658.
The Ruminant Telomere-to-Telomere (RT2T) Consortium
Kalbfleisch TS, McKay SD, Murdoch BM, Adelson DL, Almansa-Villa D, Becker G, Beckett LM, Benitez-Galeano MJ, Biase F, Casey T, Chuong E, Clark E, Clarke S, Cockett N, Couldrey C, Davis BW, Elsik CG, Faraut T, Gao Y, Genet C, Grady P, Green J, Green R, Guan D, Hagen D, Hartley GA, Heaton M, Hoyt SJ, Huang W, Jarvis E, Kalleberg J, Khatib H, Koepfi KP, Koltes J, Koren S, Kuehn C, Leeb T, Leonard A, Liu GE, Low WY, McConnell H, McRae K, Miga K, Mousel M, Neibergs H, Olagunju T, Pennell M, Petry B, Pewsner M, Phillippy AM, Pickett BD, Pineda P, Potapova T, Rachagani S, Rhie A, Rijnkels M, Robic A, Rodriguez Osorio N, Safonova Y, Schettini G, Schnabel RD, Sirpu Natesh N, Stegemiller M, Storer J, Stothard P, Stull C, Tosser-Klopp G, Traglia GM, Tuggle CK, Van Tassell CP, Watson C, Weikard R, Wimmers K, Xie S, Yang L, Smith TPL, O'Neill RJ, Rosen BD. Nat Genet. 2024;56:1566-1573.
The Stacking Cell Puzzle
Mir M, Nowotarski S. Patterns. 2024;5:101040.
Deciphering Molecular Orchestrations: XooClp IntegratesEnvironmental Sensing and Virulence Regulation inXanthomonas oryzae pv. oryzae
Sankari S, Lovelace AH. Mol Plant Microbe Interact. 2024;37:355-356.
Tracing embryonic hematopoiesis guides induction of pluripotent stem cells to hematopoietic progenitors
Mao X, Li L. Dev Cell. 2024;59:1093-1095.
Navigating the post-pandemic terrain: lessons in resilience and adaptation
Zhao C, Chiriboga LA, Chlipala EA. J Histotechnol. 2024:1-2.
The SWI/SNF chromatin remodeling complex: a critical regulator of metabolism
Church MC, Workman JL. [published ahead of print April 26 2024]. Biochem Soc Trans. 2024.
From Darkness to Discovery: Evolutionary, Adaptive and Translational Genetic Insights from Cavefish
Swaminathan A, Xia F, Rohner N. Trends Genet. 2024;40:24-38.
A working model for the formation of Robertsonian chromosomes
Gerton JL. J Cell Sci. 2024;137:jcsw261912.
Activity‐dependent formation of the topographic map and the critical period in the development of mammalian olfactory system
Fang A, Yu CR. Genesis. 2024;62:e23586.
Pluripotency of a founding field: rebranding developmental biology
Rodgers CD, Memiya C, Arur S, Babonis L, Barres M, Bartlett M, Behringer RR, Benham-Pyle BW, Bergmann D, Blackman B, Brown CT, Browne B, Camacho J, Chabu CY, Chow I, Cleaver O, Cool J, Dennis MY, Dickenson AJ, Di Talia S, Frank M, Gillmor S, Haag ES, Hariharan IK, Harland R, Husbands A, Jerome-Majewska L, Koenig K, Labonne C, Layden MJ, Lowe C, Mani M, Martick M, McKown K, Moens C, Mosimann C, Onyenedum J, Reed R, Rivera A, rokhsar DS, Royer L, Rutaganiera F, Shahan R, Sinha N, Swalla BJ, Van Norman JM, Wagner DE, Wikramanayaka A, Zebell S, Brady SM. Development. 2024;151:dev202342 doi: 10.1242/dev.202342.
Unraveling Stress Resilience: Insights From Adaptations to Extreme Environments by Astyanax mexicanus Cavefish
Cobham AE, Rohner N. J Exp Zool B Mol Dev Evol. 2024.
Rpd3S meets the nucleosome
Carrozza MJ, Workman JL. Cell Res. 2024;34:1-2.
Dynamic Changes in Ocular Shape During Human Development and its Implications for Retina Fovea Formation
Rasys AM, Wegerski A, Trainor PA, Hufnagel RB, Menke DB, Lauderdale JD. BioEssays. 2024;46:e2300054.
