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Bazzini Lab

We seek to understand how genes are regulated at the post-transcriptional level during vertebrate development and in human disease, and to uncover the mechanisms underlying the translation and stability of messenger RNA.

Research Summary

How do mRNA stability and translation control gene expression during vertebrate development and viral infection?

Research Areas

Molecular and Cell Biology, Development and Regeneration, Genetics and Genomics

Organisms

Zebrafish, Human cell lines

We study how mRNA stability and translation control gene expression during vertebrate development and viral infection. Although transcription was once considered the main determinant of gene output, we now know that how long an mRNA lasts and how efficiently it is translated play crucial roles in shaping protein levels. Our lab investigates the regulatory information encoded within mRNAs—such as sequence motifs, codons, and structural elements—that influence their stability and translation.


We focus on two major systems: zebrafish embryogenesis and viral infection. Zebrafish provide a powerful model to uncover how post-transcriptional regulation drives cell fate and early development, with lessons broadly conserved in humans. We also study how flaviviruses, such as dengue and Zika, rewire host gene expression, particularly at the level of translation, to ensure infection. Beyond these systems, we are exploring the hidden world of small open reading frames (sORFs) within noncoding regions, seeking to understand the novel microproteins they produce. Together, these efforts aim to reveal fundamental mechanisms of gene regulation with broad implications for development, physiology, and disease.

Principal Investigator

Ariel Bazzini

Associate Investigator

Stowers Institute for Medical Research

Portrait of Ariel Bazzini

Get to know the lab

Science

Codon optimality can determine mRNA stability and transcription. Codons, the three-nucleotide ‘words’ of mRNA read by protein-producing ribosomes, have a strong effect on the stability of maternal mRNA supplied to the embryo, and thus contain information that extends far beyond the protein sequences they encode. This represents a paradigm shift in how mRNA stability is viewed.

Our Team

Featured Publications

An expanded reference catalog of translated open reading frames for biomedical research

S Chothani, J Ruiz-Orera, JAS Tierney, J Clauwaert, EW Deutsch, bioRxiv, 2025.07. 03.662928

Enhanced RNA-targeting CRISPR-Cas technology in zebrafish

Moreno-Sanchez I, Hernandez-Huertas L, Nahon-Cano D, Martinez-Garcia PM, Treichel AJ, Gomez-Marin C, Tomas-Gallardo L, da Silva Pescador G, Kushawah G, Egidy R, Perera A, Diaz-Moscoso A, Cano-Ruiz A, Walker JA, 2nd, Munoz MJ, Holden K, Galceran J, Nieto MA, Bazzini AA, Moreno-Mateos MA. Nat Commun. 2025;16:2591.

Codon optimality influences homeostatic gene expression in zebrafish

DeVore ML, Bazzini AA. G3 (Bethesda). 2024 doi: 10.1093/g3journal/jkae247.

Critical role of spatio-temporally regulated maternal RNAs in zebrafish embryogenesis

G Kushawah, DB Amaral, H Hassan, M Gogol, SH Nowotarski, AA Bazzini, bioRxiv

Protein profiling of zebrafish embryos unmasks regulatory layers during early embryogenesis

da Silva Pescador G, Baia Amaral D, Varberg JM, Zhang Y, Hao Y, Florens L, Bazzini AA. Cell Rep. 2024;43:114769.

Zika virus non-coding RNAs antagonize antiviral responses by PKR-mediated translational arrest

Pallares HM, Gonzalez Lopez Ledesma MM, Oviedo-Rouco S, Castellano LA, Costa Navarro GS, Fernandez-Alvarez AJ, D'Andreiz MJ, Aldas-Bulos VD, Alvarez DE, Bazzini AA, Gamarnik AV. Nucleic Acids Res. 2024;52:11128-11147.

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